This subsection of the Sequence section indicates if the canonical sequence displayed by default in the entry is complete or not.
Sequence statusi: Fragment. Biotic crusts, Brachythecium, Bryum caespiticium, Ceratodon purpureus, ecosystem services, Funaria hygrometrica, lichen, logging, Pacific Northwest, Rhytidiadelphus, rodents. Dicranum purpureum Hedw. A strong single costa runs the length of the leaf, ending in the leaf’s acutely-pointed apex. The older and dry sporangia are generally ribbed and the peristome is single. Bryum argenteum, Ceratodon purpureus, Funaria hygrometrica, mixed-conifer forest, ponderosa pine forest, post fire, soil erosion Related Search. ,When browsing through different UniProt proteins, you can use the 'basket' to save them, so that you can back to find or analyse them later.
,This indicates the type of evidence that supports the existence of the protein. It is one of the most common cosmopolitan mosses, occurring on a wide variety of substrata, particularly those that are well-drained and acidic. The seta of this species is generally reddish in color when young and becomes purple when it reaches maturity, which is a distinctive characteristic of C. purpureus. In the moss Ceratodon purpureus a phytochrome gene encodes a phytochrome type (PhyCer) which has a C-terminal domain homologous to the catalytic domain … The kinetics of regeneration show that some cellular event has to be completed before regeneration can be initiated. The CpPHY1 recombinant C‐terminal domain was demonstrated to phosphorylate serine and … Each shoot has an unbranched central stem that is terete, hairless, and light green (above) to reddish brown (below). Although generally easily recognized with experience, occasional confusion with other superficially similar taxa (e.g. Furthermore, the margins are recurved from the base to the tip of the leaf. A bifunctional delta-fatty acyl acetylenase/desaturase from the moss Ceratodon purpureus. Please consider upgrading,
An evidence describes the source of an annotation, e.g. Sperling P (1), Lee M, Girke T, Zähringer U, Stymne S, Heinz E. Author information: (1)Institut für Allgemeine Botanik, Universität Hamburg, Germany. var. Historically, Ceratodon has been a troubling genus. xanthopus Sull. Didymodon spp.) It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.
,This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.
,This subsection of the Family and Domains section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.
,Information which has been generated by the UniProtKB automatic annotation system, without manual validation.
Your email address will not be published. This is known as the 'taxonomic identifier' or 'taxid'.,This subsection of the Names and taxonomy section contains the taxonomic hierarchical classification lineage of the source organism. populations of phytochrome molecules in the moss Ceratodon purpureus by fluorescence correlation spectroscopy (FCS) (14). A bifunctional Δ 6 desaturase/acetylenase gene was identified from the moss Ceratodon purpureus. We'd like to inform you that we have updated our Privacy Notice to comply The phytochrome gene of the moss Ceratodon purpureus (phyCer) codes for a novel phytochrome polypeptide with a predicted molecular mass of 145 kDa that has a COOH-terminal domain which is homologous to the catalytic domain of eukaryotic protein kinases. from the sequence. In the moss Ceratodon purpureus, phytochrome is encoded by two different genes, CpPHY1 and CpPHY2. & Lesq. is extremely low.
Ceratodon purpureus (Fire moss) (Dicranum purpureum) Status. Jenn. have the same checksum value, the likelihood that this would happen Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)),This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.
,This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (UniRef).
,This section is used to point to information related to entries and found in data collections other than UniProtKB.
,This section provides general information on the entry.
,This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier.
Bryoid layer response to soil disturbance by fuel reduction treatments in a dry conifer forest; Grazing and logging effects on soil surface changes in central Colorado's ponderosa pine type The Sphagnum microbiome: new insights from an ancient plant lineage; Sphagnum mosses limit total carbon consumption during fire in Alaskan black spruce forests 4 and Table 3). ,This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. Required fields are marked *. The phytochrome gene of the moss Ceratodon purpureus @byCer) codes for a novel phytochrome polypeptide with a predicted molecular mass of 145 kDa that has a COOH-terminal domain which is homologous to the catalytic domain of eukaryotic protein kinases. In addition to the ferns, phototropism and polarotropism of protonemata are also regulated by phytochromes in some mosses, such as Ceratodon purpureus, Funaria hygrometrica and Physcomitrella patens (Bittisnich & Williamson 1985; Hartmann et al. purpureus – ceratodon moss P: Variety Ceratodon purpureus (Hedw.) Mosses are distributed throughout the world except in salt water and are commonly found in moist shady locations. More information: Elisabeth M. Biersma et al, Latitudinal Biogeographic Structuring in the Globally Distributed Moss Ceratodon purpureus, Frontiers in Plant Science (2020). DNA Data Bank of Japan; a nucleotide sequence database, Database of comparative protein structure models, ProtoNet; Automatic hierarchical classification of proteins, MobiDB: a database of protein disorder and mobility annotations. purpureus ceratodon moss Ceratodon purpureus var. Help pages, FAQs, UniProtKB manual, documents, news archive and Biocuration projects. Click below on a thumbnail map or name for subspecies profiles. A closer look at the cells in the leaf will reveal that the upper cells are quadrate and smooth, while those closer to the base are usually somewhat longer. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.
,This subsection of the 'Entry information' section provides one or more accession number(s). Automatic assertion inferred from database entriesi, Automatic assertion inferred from database entriesi,
Information which has been generated by the UniProtKB automatic annotation system, without manual validation.
: Domain : Eukaryota • Regnum : Plantae • Phylum : Bryophyta • Classis : Bryopsida • Subclassis : Dicranidae • Ordo : Dicranales • Familia : Ditrichaceae • Genus : Ceratodon • Species: Ceratodon purpureus Limpr. rotundifolius Berggr. Ceratodon purpurascens (Hedw.) It is useful for tracking sequence updates. Ceratodon purpureus is typically found growing in areas that are frequently disturbed or on soils that are sterile. It also includes information pertinent to the sequence(s), including length and molecular weight. Common Name(s): Taxonomic Status: Current Standing: accepted Data Quality Indicators: Record Credibility Rating: verified - standards met The stems, which are red-brown in color, are typically unbranched and are upright. A homologous phytochrome (CpPHY1) has been characterized previously from the moss Ceratodon purpureus (Pasentsis et al., 1998; Thummler et al., 1992). , Automatic assertion inferred from database entries,This subsection of the Names and taxonomy section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. The shoots, which are usually unbranched, can reach a height of up to around 3 cm. SPECIES: Ceratodon purpureus GENERAL DISTRIBUTION : Fire moss is widespread throughout Canada, where it is known from every province and territory. using the generator polynomial: x64 + x4 + x3 + x + 1. Individual shoots are about 0.5–3 cm. The information is filed in different subsections. ... Family and domain databases. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.
,This section provides any useful information about the protein, mostly biological knowledge.
,The Gene Ontology (GO) project provides a set of hierarchical controlled vocabulary split into 3 categories:
,This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.
,This subsection of the Names and taxonomy section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.
,Information which has been imported from another database using automatic procedures.
The enzyme, characterized from the moss Ceratodon purpureus, converts the double bond at position 6 of gamma-linolenate and stearidonate into a triple bond. You are using a version of browser that may not display all the features of this website. Ceratodon purpureus – This tiny moss has brilliant, deep green color with magnificent red sporophytes. Cyclic redundancy and other checksumsHowever UniProtKB may contain entries with identical sequences in case The version number for both the entry and the canonical sequence are also displayed.
,This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (reviewed) or to the computer-annotated TrEMBL section (unreviewed).
, The European Molecular Biology Laboratory, State Secretariat for Education, Research and Innovation, Ceratodon purpureus (Fire moss) (Dicranum purpureum). Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.,This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). Wikispecies has an entry on: Ceratodon purpureus . Protein sets from fully sequenced genomes. Unreviewed-Annotation score: ... Family and domain databases. 1983; Jenkins & Cove 1983). Native Introduced Native and Introduced.
Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.
Brid. In such cases, closer examination with a compound microscope may be required to name difficult specimens with confidence.
In the United States it occurs in every state. Purple Moss (Ceratodon purpureus) Description: This short-lived perennial moss forms dense to open mats of both fertile and infertile shoots. Ceratodon purpureus var. Ceratodon purpureus (Fire moss) (Dicranum purpureum) Status. CpPHY2 represents a conventional type phytochrome characterized by a C-terminus homologous to the catalytic domain of bacterial sensor histidine kinases, whereas CpPHY1 represents an unique phytochrome, which carries a C-terminus homologous to the catalytic domain of eukaryotic … These are stable identifiers and should be used to cite UniProtKB entries.
Be forewarned, Ceratodon may go through a dormant or adjustment phase when it turns brown for a while. Your email address will not be published. Goffinet et al. The current subsections and their content are listed below:
This subsection of the Sequence section indicates if the canonical sequence displayed by default in the entry is complete or not.
,The checksum is a form of redundancy check that is calculated The present study was undertaken to examine the single- ... Domain architecture of the cyanobacterial phytochrome 1 (Cph1), the … – ceratodon moss P : Contains 2 Varieties and 2 accepted taxa overall : Down one level : Variety Ceratodon purpureus (Hedw.) The other organism used in this study, the moss Ceratodon purpureus, contains four phytochromes, termed Phy1 to Phy4 (Thümmler et al., 1992; Hughes et al., 1996; Mittmann et al., 2009). with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018. of multiple genes (paralogs).
The product of the latter, dicranin, is the main fatty acid found in C. purpureus. The development of the regeneration axis is strongly influenced by light, with axis alignment and axis polarity being fixed independently. Ceratodon purpureus and S. antarctici exhibited significantly lower cell wall UVAC concentrations after 2 weeks but did not significantly alter intracellular UVAC (Fig. CpPHY2 represents a conventional type phytochrome characterized by a C-terminus homologous to the catalytic domain of bacterial sensor histidine kinases, whereas CpPHY1 represents an unique phytochrome, which carries a C-terminus homologous to the catalytic domain of eukaryotic … J. The leaves of this species are lance-shaped, typically spreading when moist and contorted when dry. It grows upright in dense mound colonies that feel like velvet to the touch. Ceratodon protoplasts regenerate by polar outgrowth to form cell filaments. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.,This subsection of the Names and taxonomy section provides information on the name(s) of the organism that is the source of the protein sequence.
,This subsection of the Names and taxonomy section shows the unique identifier assigned by the NCBI to the source organism of the protein.
Systems used to automatically annotate proteins with high accuracy: Select one of the options below to target your search: Select item(s) and click on "Add to basket" to create your own collection here (400 entries max),Information which has been imported from another database using automatic procedures.
The algorithm is described in the ISO 3309 standard. Patricia Algarra's 13 research works with 302 citations and 433 reads, including: Structural Adaptations to Light Reception in Two Morphotypes of Corallina elongata ELLIS & SOLAND Brid. Teeth are often present along the margins near the apex. In the moss Ceratodon purpureus a phytochrome gene encodes a phytochrome type (PhyCer) which has a C-terminal domain homolog ous to the catalytic domain of eukaryotic protein kinases (PKs; Thiimmler et al. – roundleaf ceratodon moss P In the moss Ceratodon purpureus a phytochrome gene encodes a phytochrome type (PhyCer) which has a C-terminal domain homologous to the catalytic domain of eukaryotic protein kinases (PKs). Abstract. var. ... (TE) domain of hFAS, which cleaves fatty acid from fatty acyl carrier protein (ACP), was replaced with heterologous short-chain TEs: one from Cuphea palustris (CpFatB1) and the other from Rattus norvegicus (TEII). Ceratodon purpureus. Automatic assertion inferred from signature matchi, Integrated resource of protein families, domains and functional sites, Simple Modular Architecture Research Tool; a protein domain database, Superfamily database of structural and functional annotation. This small plant usually forms cushions or dense short tufts that can vary in color from yellow to mid-green or red to purplish-brown. When they are young and immature they tend to be almost upright, smooth and green in color. In the moss Ceratodon purpureus, phytochrome is encoded by two different genes, CpPHY1 and CpPHY2.It should be noted that while, in theory, two different sequences could Fieldtrip: UBC Herbarium and Beaty Museum, LiToL: Assembling the Liverwort Tree of Life, Southern Illinois University-Carbondale: Bryoology. Ceratodon purpureus is considered to be a pioneer species and can often be seen in abundance on burn sites. The PAS repeat domain is important for proper phytochrome function and can interact with putative signaling partners. If growing in an area that is not disturbed, it is most likely growing in a site that is exposed and dries out rapidly, such as on walls, roadsides and rooftops. They are best known for those species that carpet woodland and forest floors. Taxonomic interpretations, especially with respect to C. purpureus in the broad sense, have varied widely, mainly because of the high degree of environmental and suspected genetic variation across its range. tall. As they mature, they become more inclined and change to a reddish-brown to purplish color. rotundifolius roundleaf ceratodon …
The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64)
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Every state purpureus – Ceratodon moss P: Variety Ceratodon purpureus ( moss! Different genes, CpPHY1 and CpPHY2 this website required to name difficult specimens with.! Litol: Assembling the Liverwort Tree of Life, Southern Illinois University-Carbondale Bryoology! Uvac was insignificant are best known for those species that carpet woodland and forest floors forest floors to! Ceratodon moss P: Variety Ceratodon purpureus, phytochrome is encoded by two different genes, CpPHY1 and CpPHY2 fluorescence! Mid-Green or red to purplish-brown a compound microscope may be required to name difficult specimens with.! Up to around 3 cm serine/ threonine as well to tyrosine kinases C. purpureus ’ s acutely-pointed apex plant forms. Along the ceratodon purpureus domain near the apex ( FCS ) ( Dicranum purpureum ) Status adjustment when. 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